Comedy - One Piece, Great Teacher Onizuka
Full - Gits 1 and Gits 2, Dead leaves
Story - Cowboy Bebop, Trapece, Mononoke, Kaiji
Honorable mentions - Fullmetal Alchemist: Brotherhood, Cromartie, Attack on Titan, Saiki Kusuo, Death Note, Akagi, Yojouhan Shinwa Taikei, Kill La Kill, Welcome to the N.H.K, Detroit Metal City, Prison School, Mob Psycho 100, Moyashimon(1)
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It's hard to pick, because a lot of good anime are adaptations from manga or VNs and I usually like the originals much more.
I'm going to say Samurai Champloo and Death Parade. I haven't watched anime in a while, though.
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One Punch Man
There are so many I really enjoyed, however, that it is virtually impossible to pick a second most-favorite.
Samurai Champloo
Kenichi
Air Gear
Naruto (minus the filler content)
Soul Eater
Fairy Tail
Sekirei (manga was much better)
Sword Art Online (although those who don't understand it tend to hate it)
Deadly Sins
Ah! My Goddess!
Baka No Test
Angel Beats!
Durarara!
...and so many more. These are only the titles I can remember off the top of my head. And that's not even getting into the ones I have yet to see, like Stein's Gate.
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Can't believe I didn't see this post earlier. +1 for fucking DMC
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A very hard question to answer. I will name a few off the top.... Yu Yu Hakusho, Gintama, Jo Jo's Bizarre Adventure, Ushio and Tora, Bleach, Welcome to the NHK and FLCL
As far as manga go ( I know you didn't ask, but you are getting it anyways): Deadman Wonderland (Truly a great manga, and its a shame what happened to its anime version/producers.), Parasyte, Bleach, Attack on Titan, Jo Jo's Bizarre Adventure, Berserk and Project A.R.M.S.
Really though, too many to mention. Definitely a lot of solid anime movies as well.
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railgun S (only really the sisters arc but its still favs with just that)
Baccano
Stiens;gate
hunter x hunter (2011)
Gintama
Zettai karen children the unlimited (and only the unlimited-the original series its a spin off of is so trashy)
FMAB
magi s2
Mawaru penguindrum
soul eater (for nostalgia)
:3
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1 (absolute undisputed comedic champion) - Ranma 1/2 (and the Manga is even better :D )
2 - Sailor Moon
3 - KonoSuba (goes up to 2-nd place if they ever make an English dub)
4 - I dunno... probably Date A Live since it's been on my mind ever since I read they might be making a 3-rd Season. :P
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My favorite anime is Shingeki no Kyojin, the soundtrack is so epic and has a sensational story (Hiroyuki Sawano is a genius)!
https://www.youtube.com/watch?v=SO-jxNDObRc
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